Adaptive learning of compressible strings

Suppose an oracle knows a string S that is unknown to us and that we want to determine. The oracle can answer queries of the form "Is s a substring of S?". In 1995, Skiena and Sundaram showed that, in the worst case, any algorithm needs to ask the oracle Sigma n/4 - O(n) queries in order to be able to reconstruct the hidden string, where Sigma is the size of the alphabet of S and n its length, and gave an algorithm that spends (Sigma - 1)n + O(Sigma root n) queries to reconstruct S. The main contribution of our paper is to improve the above upper-bound in the context where the string is compressible. We first present a universal algorithm that, given a (computable) compressor that compresses the string to Tau bits, performs q = O(Tau) substring queries; this algorithm, however, runs in exponential time. For this reason, the second part of the paper focuses on more time-efficient algorithms whose number of queries is bounded by specific compressibility measures. We first show that any string of length n over an integer alphabet of size Sigma with rle runs can be reconstructed with q = O(rle(Sigma + log nrle)) substring queries in linear time and space. We then present an algorithm that spends q is an element of O (Sigma g log n) substring queries and runs in O (n(logn + log Sigma) + q) time using linear space, where g is the size of a smallest straight-line program generating the string. (c) 2021 The Author(s). Published by Elsevier B.V. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).